School of Computing, Dublin City University, Ireland

MODELLING & SCIENTIFIC COMPUTING


  
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Research:    Social Systems // Environmental and Transport // Financial and Socioeconomic Modelling // Assisted Living // Biocomputation // Data Science
  

Author Notes : Read about the Recommended MODSCI Referencing Style


Publications and Presentations
 
RECENT PUBLICATIONS (2016,2015, 2014, 2013, 2012, 2011, 2010, 2009, 2008, 2007, 2006, 2005, 2004, 2003, 2002, 2001)

    2017
     

  • Hillmann, A., Crane, M. and Ruskin H.J. (2017), HIV models for treatment interruption: Adaptation and comparison, Physica A: Physica A: Statistical Mechanics and its Applications, Vol.:483, 2017, pp. 44–56, DOI=https://doi.org/10.1016/j.physa.2017.05.005

  • 2016
     

  • Ruskin, H.J. (2016), Computational Modeling and Analysis of Microarray Data: New Horizons, Microarrays, Editorial - Special Issue, Vol.:5 (4), 2016, Oct. 21, DOI = 10.3390/microarrays5040026

  • Balaur, I., Saqi, M., Barat, A., Lysenko, A., Mazein, A., Rawlings, C.J., Ruskin, H.J. and Auffray, C. (2016), EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer, Journal of Computational Biology, September 2016, ePub. ahead of print. DOI: 10.1089/cmb.2016.0095

  • Mamkaitis, A., Bezbradica, M. and Helfert, M. (2016), Urban Enterprise: a review of Smart City frameworks from an Enterprise Architecture perspective, IEEE International Smart Cities Conference (ISC2), Italy, 12-15 September 2016.

  • Li, N., Crane, M., Gurrin, C. and Ruskin, H.J. (2016), Finding Motifs in Large Personal Lifelogs, In AH’16: Proceedings of the 7th Augmented Human International Conference, Geneva, Switzerland, ACM, New York, NY, USA, Article 9, 8 pages. DOI=http://dx.doi.org/10.1145/2875194.2875214.

  • Al-Sharkasi A., Crane, M. and Ruskin, H.J. (2016), Evaluating the Volatility Behaviour in Irish ISEQ Overall Index Using GARCH Models, British Journal of Economics, Management & Trade, ISSN: 2278-098X,Vol.: 13, (1), pp.1-13 DOI : 10.9734/BJEMT/2016/24632.

  • 2015
     

  • Barat A. and Ruskin H.J.(2015), Comparative Correlation Structure of Colon Cancer Locus Specific Methylation: Characterisation of Patient Profiles and Potential Markers across 3 Array-Based Datasets, J Cancer. 6(8), pp. 795-811; DOI: 10.7150/jca.9883. eCollection 2015.

  • Barat A., Ruskin H.J., Byrne A.T. and Prehn J.H.M. (2015), Integrating Colon Cancer Microarray Data: Associating Locus-Specific Methylation Groups to Gene Expression-Based Classifications, Microarrays 4(4), pp. 630-646; DOI:10.3390/microarrays4040630: Special Issue on ‘Computational Modeling and Analysis of Microarray Data: New Horizons'.

  • Ruskin, H.J. and Roznovăţ, I.A. (2015), Computational Models & Methods in Systems Biology & Medicine - Editorial, IET Systems Biology 9(6), p. 217; DOI: 10.1049/iet-syb.2015.0078: Special Issue on 'Computational Models & Methods in Systems Biology & Medicine'.

  • Roznovăţ, I.A. and Ruskin, H.J. (2015), A Theoretical Cross-Comparative Analysis on Dynamics of Small Intestine and Colon Crypts during Cancer Initiation, IET Systems Biology 9(6), pp. 259 –267; DOI: 10.1049/iet-syb.2015.0048: Special Issue on 'Computational Models & Methods in Systems Biology & Medicine'.

  • Bezbradica, M. , Crane, M. and Ruskin, H.J. (2015), Applications of High Performance Algorithms to Large Scale Cellular Automata Frameworks used in Pharmaceutical Modelling, Journal of Cellular Automata - to appear in the 2nd quarter 2015.

  • Sîrbu, A., Crane, M. and Ruskin, H.J.(2015), Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks, Microarrays 4(2), pp. 255-269; DOI:10.3390/microarrays4020255.

  • 2014
     

  • Bezbradica, M. and Ruskin, H.J.(2014), Modelling Impact of Morphological Urban Structure and Cognitive Behaviour on Pedestrian Flows, Murgante, B. et al. (eds.). ICCSA 2014. Springer, LNCS 8582. pp. 268-283. DOI: 10.1007/978-3-319-09147-1_20.

  • Ruskin, H.J. and Perrin D.(2014), Computentional Methods in Epigenetic Research, Molecular Life Sciences; An Encyclopedic Reference, Bell B. et al. (Eds.) Springer (NY), DOI: 10.1007/978-1-4614-6436-5; Online ISBN: 978-1-4614-6436-5.

  • Roznovăţ, I.A. and Ruskin, H.J., A Computational Analysis on Methylation Inhibition during Intestinal Cancer Initiation, Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Belfast, UK, 2nd-5th November 2014, pp. 22 - 29. DOI: 10.1109/BIBM.2014.6999255.

  • Roznovăţ, I.A. and Ruskin, H.J., LogisticCrypt - a Logistic Model of Intestinal Crypt Structure, Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Belfast, UK, 2nd-5th November 2014, pp. 14 - 21. DOI: 10.1109/BIBM.2014.6999254.

  • Ruskin, H.J., Perrin, D. and Roznovăţ, I.A., Building Cross-Scale Models of Epigenetic Mechanisms, Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Belfast, UK, 2nd-5th November 2014, pp. 30 - 37. DOI: 10.1109/BIBM.2014.6999256.

  • Bezbradica, M., Ruskin, H.J. and Crane, M. (2014), Probabilistic Pharmaceutical Modelling: A Comparison Between Synchronous and Asynchronous Cellular Automata, Parallel Processing and Applied Mathematics; Wyrzykowski, R., Dongarra, J., Karczewski, K. and Wasniewski, J. (eds.) PPAM 2013. LNCS 8385. Heidelberg: Springer, pp 699-710.

  • Bezbradica, M., Ruskin, H.J. and Crane, M. (2014), Comparative Analysis of Asynchronous Cellular Automata in Stochastic Pharmaceutical Modelling, Journal of Computational Science, Vol.5 (5), pp. 834-840, DOI:10.1016/j.jocs.2014.04.010.

  • Deo P. and Ruskin, H.J. (2014), Urban signalised intersections: Impact of vehicle heterogeneity and driver type on cross-traffic manoeuvres, Physica A: Statistical Mechanics and its Applications, vol. 405, 1 July 2014, pp.140 - 150. DOI: http://dx.doi.org/10.1016/j.physa.2014.02.078.

  • Sîrbu, A., Ruskin, H. J., and Crane, M., EGIA - Evolutionary Optimisation of Gene Regulatory Networks, an Integrative Approach, Complex Networks V, Studies in Computational Intelligence, Volume 549, 2014, pp. 217-229. DOI: 10.1007/978-3-319-05401-8_21.

  • Tuohey, L. 2014. Lessons from Practices and Standards in Safety-Critical and Regulated Sectors. Chapter 16 (invited) of "Handbook of Research on Emerging Advancements and Technologies in Software Engineering", ISBN: 978-1-4666-6026-7, June, 2014. PUBLISHER: IGI-Global.

  • Al-Sharkasi, A., Ruskin, H.J., Crane, M., Matos, J. and Gama, S.M.A., A Wavelet-Based Method to Measure Stock Market Development, Open Journal of Statistics, vol. 4 (1), pp. 89 - 96, 2014. DOI: 10.4236/ojs.2014.41009.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Random Matrix Ensembles of Time Correlation Matrices to Analyze Visual Lifelogs, MultiMedia Modeling, Lecture Notes in Computer Science Volume 8325, 2014, pp. 400-411.

  • 2013
     

  • Vasic, J. and Ruskin, H.J., Interaction of cars and bicycles on a one-way road intersection - a network CA-based model. Kozlov, V.V., Buslaev, A.P., Bugaev, A.S., Yashina, M.V., Schadschneider, A., Schreckenberg, M. (Eds.) Traffic and Granular Flow '11. Springer, 2013.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Application of Statistical Physics for the Identification of Important Events in Visual Liflogs, In Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shanghai, China, 18th-21th December 2013, pp. 589 - 592.

  • Roznovăţ, I.A. and Ruskin, H.J., Methylation inhibitors and Carcinogens in an Agent-based model for Colon Crypt Dynamics during Cancer Development, Proceedings of the UKSim/AMSS 7th European Modelling Symposium (EMS2013), Manchester, UK, 20th -22nd November 2013, pp. 144 - 149. DOI 10.1109/EMS.2013.27. Published by IEEE Computer Society - Conference Publishing Service (CPS).

  • Li, N., Crane, M., Gurrin, C., and Ruskin, H.J., Applying Random Matrix Theory Filters on SenseCam Images, ERCIM News, 95 (19-20), October 2013.

  • Roznovăţ, I.A. and Ruskin, H.J., Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics, ERCIM News, 95 (42-43), October 2013.

  • Szczesna, K., Sandoval, J., Modhukur, V., Kull, M., Rajashekar, B., Perrin, D., Barat, A., Raghavan, K., Roznovăţ, I.A., Huertas, D., Vilo, J. and Ruskin, H.J., Complexity of Interdependent Epigenetic Signals in Cancer Initiation, Book of abstracts for the "Complexity-NET projects: Interdisciplinary Challenges for Complexity Science" Workshop, European Conference on Complex Systems (ECCS'13), Barcelona, Spain, 16th - 20th of September 2013, pp. 16 - 23.

  • Roznovăţ, I.A. and Ruskin, H.J., A Computational Model for Genetic and Epigenetic Signals in Colon Cancer, Interdisciplinary Sciences: Computational Life Sciences, 5 (3), pp. 175 - 186, 2013. Springer Berlin Heidelberg. DOI: 10.1007/s12539-013-0172-y.

  • Li, N., Crane, M. and Ruskin, H.J. 2013. Visual Experience for Recognising Human Activities, Communications in Computer and Information Science, Evaluating AAL Systems Through Competitive Benchmarking, vol: 362, pp. 173-185, 2013. Springer Berlin Heidelberg, ISBN: 978-3-642-37418-0.

  • Li, N., Crane, M. and Ruskin, H.J. 2013. Automatically Detecting Significant Events on SenseCam, International Journal of Wavelets Multiresolution and Information Processin, Vol. 11, No. 6 (2013) 1350050.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Multiscaled Cross-Correlation Dynamics on SenseCam Lifelogged Images, MMM'13: Proceedings of the 19th International Conference on Multimedia Modeling, Springer Verlag, Huangshan, China, 1 7732: 490-501, 7th - 9th January 2013.

  • 2012
     

  • Kernan, J. and Ruskin, H.J., Microarrays - Innovative Standards in a Changing World: the Case for Cloud, ERCIM News, 90 (46-47), July 2012.

  • Vasic, J. and Ruskin, H.J., A Cellular Automata-Based Network Model for Heterogeneous Traffic: Intersections, Turns and Their Connection. Sirakoulis G.C., Bandini, S. (eds.). Cellular Automata, Lecture Notes in Computer Science 7495. pp.835-844, 2012. DOI 10.1007/978-3-642-33350-7_87.

  • Vasic, J. and Ruskin, H.J., Agent-based space-time discrete simulation of urban traffic including bicycles. ABMTRANS'12, Procedia Computer Science. vol. 10, pp. 860-865, 2012.

  • Li, N., Crane, M. and Ruskin, H.J. Automatically Detecting Significant Events on SenseCam, To appear in the proceedings of the AAL FORUM 2012, 24th - 27th September, 2012, Eindhoven, Netherlands.

  • Perrin, D. and Ohsaki, H. 2012. Decentralised Communication in Autonomous Agent Swarms, Proceedings of the 26th International Conference on Advanced Information Networking and Applications, IEEE Computer Society.

  • Ohsaki, H., Yamada, Y., Perrin, D. and Imase, M. 2012. Impact of Mobility Constraints on Epidemic Broadcast Mechanisms in Delay-Tolerant Networks, Proceedings of the 26th International Conference on Advanced Information Networking and Applications, IEEE Computer Society.

  • Perrin, D. and Ohsaki, H. 2012. Impact of mobility and topology on information diffusion in MANETs, Proceedings of the 2012 IEEE Symposium on Computers and Communications, IEEE Computer Society.

  • Perrin, D., Bezbradica, M., Crane, M., Ruskin, H.J. and Duhamel, C., High-Performance Computing for Data Analytics, 2012 IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications (DS-RT), Dublin, Ireland, 2012, pp. 234 - 242.

  • Roznovăţ, I.A. and Ruskin, H.J., A Computational Model for Genetic and Epigenetic Signals in Colon Cancer, Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), Philadelphia, USA, 4th-7th October 2012, pp. 188 - 195. doi 10.1109/BIBMW.2012.6470302.

  • Roznovăţ, I.A. and Ruskin, H.J., Modelling the Genetic and Epigenetic Signals in Colon Cancer using a Bayesian Network, Proceedings of the 12th European Conference on Complex Systems (ECCS'12), Springer Proceedings in Complexity, Brussels, Belgium, 3rd-7th September 2012, pp. 1059-1062. doi 10.1007/978-3-319-00395-5_126.

  • Shakya, K., O'Connell, M. J., Ruskin, H. J. The landscape for epigenetic/epigenomic biomedical resources, Epigenetics, 7 (9): 982 – 986, 2012.

  • Morgan, C. C.*, Shakya, K.*, Webb, A. E., Walsh, T. A., Lynch, M., Loscher, C. E., Ruskin, H. J., O'Connell, M. J. Colon cancer associated genes exhibit signatures of positive selection at functionally important positions, BMC Evol Biol. 2012, 12:114, doi:10.1186/1471-2148-12-114, PMID: 22788692.

  • Marbach, D., Costello, J.C., Küffner, R., Vega, N., Prill, R.J., Camacho, D.M., Allison, K.R., the DREAM5 Consortium, Kellis, M., Collins, J.J., and Stolovitzky, G. 2012. Wisdom of crowds for robust gene network inference, Nature Methods 9, 796–804.
    The DREAM5 consortium: Aderhold, A., Allison, K.R., Bonneau, R., Camacho, D.M., Chen, Y., Collins, J.J., Cordero, F., Costello, J.C., Crane, M., Dondelinger, F., Drton, M., Esposito, R., Foygel, R., Fuente, A., Gertheiss, J., Geurts, P., Greenfield, A., Grzegorczyk, M., Haury, A.C., Holmes, B., Hothorn, T., Husmeier, D., Huynh-Thu, V.A., Irrthum, A., Kellis, M., Karlebach, G., Küffner, R., Lèbre, S., Leo, V., Madar, A., Mani S., Marbach, D., Mordelet, F., Ostrer, H., Ouyang, Z., Pandya, R., Petri, T., Pinna, A., Poultney, C.S., Prill, R.J., Rezny, S., Ruskin, H.J., Saeys, Y., Shamir, R., Sîrbu, A., Song, M., Soranzo, N., Statnikov, A., Stolovitzky, G., Vega, N., Vera-Licona P., Vert, J.P., Visconti, A., Wang, H., Wehenkel, L., Windhager, L., Zhang, Y., and Zimmer, R.

  • Bezbradica, M., Crane, M., and Ruskin,H. J., Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling, In the Proceedings of 2012 International Conference on High Performance Computing and Simulation (HPCS2012), Madrid, Spain, 2nd - 6th July 2012. Nominated for the HPCS 2012 Outstanding Paper Award.

  • Raghavan, K., and Ruskin, H.J., Modeling DNA Methylation Dynamics, in Dr. T. Tatarinova and Dr. O. Kerton, DNA Methylation - From Genomics to Technology, (ISBN-9789535103202, 1st Ed., 3-28), InTech Publications, 2012.

  • Vasic, J. and Ruskin, H.J. 2012. A CA-based model for city traffic including bicycles. IN: Serafeim Polyzos (ed.) Urban Development. Rijeka:InTech, (book chapter).

  • Vasic, J. and Ruskin, H.J. 2012. A discrete simulation model for traffic including bicycles on urban networks, applied to intersection of two one-way streets. Parallel Processing and Applied Mathematics; Wyrzykowski, R., Dongarra, J., Karczewski, K. and Wasniewski, J. (eds.) PPAM 2011. LNCS 7204. Heidelberg: Springer, pp 598-607. DOI 10.1007/978-3-642-31500-8_62.

  • Vasic, J. and Ruskin, H.J. 2012. Cellular automata simulation of traffic including cars and bicycles. Physica A. 391(8), pp. 2720-2729.

  • Sîrbu, A., Kerr, G., Crane, M. and Ruskin, H. J. RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering, PLoS ONE 7(12): e50986

  • 2011
     

  • Li, N., Crane, M. and Ruskin, H.J. 2011. Automatically Detecting Significant Events on SenseCam. ERCIM News, 87.

  • Vasic, J. and Ruskin, H.J. 2011. Throughput and delay in a discrete simulation model for traffic including bicycles on urban networks. Proceeding of the ITRN2011, http://www.itrn.ie/uploads/sesE3_ID129.pdf.

  • Perrin, D. 2011. Complexity and high-end computing in Biology & Medicine, Software Tools and Algorithms for Biological Systems (Advances in Experimental Medicine and Biology series, volume 696), pp. 377-384, Springer.

  • Perrin, D., and Ohsaki, H. 2011. Impact of randomness on information diffusion in Mobile Ad-Hoc Networks, Technical report RCS2011-97, Institute of Electronics, Information and Communication Engineers.

  • Perrin, D., and Ohsaki, H. 2011. Decentralised communication in autonomous agent swarms, Technical report CQ2011-30, Institute of Electronics, Information and Communication Engineers.

  • Yamada, Y., Ohsaki, H., Perrin, D., and Imase, M. 2011. Impact of Mobility Constraints on Epidemic Broadcast in DTNs, Proceedings of the eighth International Conference on Complex Systems, ICCS 2011:369-375.

  • Perrin, D., and Ohsaki, H. 2011. A Parallel Approach to Social Network Generation and Agent-Based Epidemic Simulation, Proceedings of the ninth Australasian Symposium on Parallel and Distributed Computing, AusPDC 2011, CRPIT, 118:33-34.

  • Sîrbu, A., Ruskin, H. J., and Crane, M., Integrating Heterogeneous Gene Expression Data for Gene Regulatory Network Modelling, Theory In Biosciences, Springer-Verlag, 1-8 , DOI 10.1007/s12064-011-0133-0

  • Raghavan, K., Roznovăţ, I.A., and Ruskin, H.J., Complex Interdependent Epigenetic Signals in Cancer Initiation. CSS Assyst Newsletter, 22, September 2011.

  • Raghavan, K. and Ruskin, H.J., Computational Epigenetic Micromodel - Framework for Parallel Implementation and Information Flow. Proceedings of 8th International Conference on Complex Systems 2011 (ICCS) , Boston, USA, June 2011.

  • Raghavan, K., Ruskin, H.J., and Perrin, D., Computational Analysis of Epigenetic Information in Human DNA Sequences. International Proceedings of Chemical, Biological and Environmental Engineering,Vol. (5), May 2011

  • Daly, J., Ruskin, H. J., and Crane, M., Can random matrix filters be used for trading in the foreign exchange market? - A comparison of foreign exchange and stock portfolio filtering. Journal of Dynamics of Socio-Economic Systems, 2:2, 2011 (as part of the proceedings of the 1st COST Action MP0801 “Physics of Competition and Conflicts”, Rome, May 2009).

  • Bezbradica, M., Ruskin, H.J., and Crane, M., Modelling drug coatings: A parallel cellular automata model of ethylcellulose-coated microspheres, Proceedings of The International Conference on Bioscience, Biochemistry and Bioinformatics, ICBBB 2011, Vol.5, pp.419-424, 2011.

  • Bezbradica, M., Crane, M., and Ruskin, H.J., Probabilistic modelling of drug dissolution, ERCIM News, 84(42/43), January 2011.

  • Vasic, J. and Ruskin, H.J. 2011. A discrete flow simulation model for urban road networks, with application to combined car and single-file bicycle traffic. IN: Murgante, B., Gervasi, O., Iglesias, A., Taniar, D., Apduhan, B. (eds.) ICCSA 2011. LNCS 6782, pp.602-614. Heidelberg: Springer.

  • Vasic, J. and Ruskin, H.J., Simulation of urban traffic including bicycles, ERCIM News, April 2011.

  • Murphy, J.T., Walshe, R. and Devocelle, M. A Computational Modelling Approach to Explore the Anti-Microbial Pro-Drug Delivery System, Proceedings of the BIOINFORMATICS 2011 Conference, Rome, Italy, 26-29 Jan, 2011.

  • Sîrbu A., Ruskin H.J. and Crane M. Stages of Gene Regulatory Network Inference: the Evolutionary Algorithm Role, Evolutionary Algorithms, Eisuke Kita (Ed.), ISNB 978-953-307-171-8, InTech, 2011

  • 2010
     

  • Bezbradica, M., Ruskin, H.J., and Crane, M. Probabilistic models for dissolution of ethylcellulose coated microspheres, Proceedings of The European Simulation and Modelling conference, ESM'2010, Hasselt, Belgium, pages 408–412, October, 2010.

  • Barat A., Ruskin H.J. A Manually Curated Novel Knowledge Management System for Genetic and Epigenetic Molecular Determinants of Colon Cancer, The Open Colorectal Cancer Journal, 3, pp36-46, 2010.

  • Raghavan K., Ruskin H.J., Perrin D., Goasmat F., Burns J. Computational Micromodel for Epigenetic Mechanisms., PLoS ONE 5(11): e14031, 2010.

  • Murphy J.T., Walshe R., Devocelle M. A Theoretical Analysis of the Pro-Drug Delivery System for Treating Antibiotic-Resistant Bacteria IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15 Jul. 2010. IEEE computer Society Digital Library. IEEE Computer Society. 2010

  • Murphy J.T., Walshe R. Modeling Antibiotic Resistance in Bacterial Colonies Using Agent-Based Approach, Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology, 131-155, ed. Werner Dubitzky, Springer, (book chapter) ,2010.

  • Perrin, D., Ruskin, H. J., and Niwa, T. Cell type-dependent, infection-induced, aberrant DNA methylation in gastric cancer. Journal of Theoretical Biology 264(2):570–577, 2010

  • Perrin, D., Ruskin H. J., and Crane, M. Model refinement through high-performance computing: an agent-based HIV example. Immunome Research 6(Suppl 1): S3, 2010

  • Kerr, G., Perrin, D., Ruskin, H.J., Crane, M. Edge Weighting of Gene Expression Graphs, Advances in Complex Systems, 13:2, 217-238, World Scientific 2010.

  • Shakya, K., Ruskin, H. J., Kerr, G., Crane, M., Becker, J., Comparison of Microarray Pre-Processing Methods, Chapter 2, Advances in Computational Biology, Springer, ISBN: 978-1-4419-5912-6, 2010.

  • Sîrbu A., Ruskin H.J. and Crane M. Regulatory network modelling: Correlation for structure and parameter optimisation, Proceedings of The IASTED International Conference on Computational Bioscience, Cambridge, Massachusetts, 1-3 Nov, 2010.

  • Sîrbu A., Ruskin H.J. and Crane M. Cross-platform microarray data normalisation for regulatory network inference, PLoS ONE 5(11): e13822. doi:10.1371/journal.pone.0013822, 2010.

  • Sîrbu A., Ruskin H.J. and Crane M. Modelling Gene Regulatory Networks - An Integrative Approach, ERCIM News, 81(36-37), Special Issue: Computational Science/Scientific Computing. Simulation & Modelling for Research and Industry , April 2010.

  • Daly, J., Crane, M. and Ruskin, H. J. Random matrix theory filters and currency portfolio optimisation. Journal of Physics: Conference Series, 221(1), 2010 (as part of the proceedings of APFA7: Applications of Physics in Financial Analysis 7, Tokyo, March 2009).

  • Sîrbu A., Ruskin H.J. and Crane M. Comparison of evolutionary algorithms in gene regulatory network model inference, BMC Bioinformatics, 11:59, 2010.

  • 2009
     

  • Conlon, T., Ruskin, H.J., Crane, M. Multiscaled Cross-Correlation Dynamics in Financial Time Series, Advances in Complex Systems, 12(4-5), 439-454, 2009.

  • Conlon T., Ruskin H.J. and Crane M., Seizure characterisation using frequency-dependent multivariate dynamics, Computers in Biology and Medicine, 39(9), 760-767, 2009.

  • Conlon, T., Ruskin, H.J., Crane, M., Cross-Correlation Dynamics in Financial Time Series, Physica A, 388, 705-714, 2009

  • Burns, J., Ruskin, H.J., Perrin, D. and Walsh, J. Visualization of Complex Biological Systems: An Immune Response Model Using OpenGL, Book – Complex Sciences, Book Series - Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, ISBN - 978-3-642-02465-8 (Print) 978-3-642-02466-5 (Online), Volume 4, Part1, p. 671-679, 2009.

  • Murphy J.T., Walshe R. and Devocelle M. Modelling the Population Dynamics of Antibiotic-Resistant Bacteria: An Agent-Based Approach, International Journal of Modern Physics C, 20(3):435-457, 2009.

  • Murphy J.T., Walshe R.Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology, ed. Werner Dubitzky. (Springer, book chapter - in press), 2009.

  • Perrin, D., Ruskin, H.J., Crane, M.,In Silico Biology: Making the most of parallel computing,Lazakidou, A.A. (Ed), Handbook of Research on Biocomputation and Biomedical Informatics: Case Studies and Applications, IGI Global (was Idea Group Publishing Ltd), 2009

  • 2008
     

  • Quinn-Whelton, N., Killen, L., Guinee, T. and Buckley, F.,Dedetction of abnormal recordings in Irish milk recorded data, Irish Journal of Agricultureal and food Research 46: 117-127,2008

  • Conlon T., Ruskin H.J. and Crane M.,Multiscaled cross-correlation dynamics in financial time series,5th European Conference on Complex Systems, Jerusalem, Israel, Sept. 10-19 2008

  • Murphy J.T., Walshe R. and Devocelle M.,A Computational Model of Antibiotic-Resistance Mechanisms in Methicillin-Resistant /Staphylococcus aureus(MRSA), Journal of Theoretical Biology, 254(2):284-93, 2008

  • McGuinness, E., Crane, M., Ruskin, H.J., Crane, L.,Simplification of HIV Pathogenesis Models Using Dimensional Analysis,submitted to Mathematical Biosciences, 2008

  • Conlon, T., Crane, M., Ruskin, H.J., Wavelet Multiscale Analysis of Hedge Funds,Statistical and Theoretical Physics, Vol 387/21, pp5197-5204, Elsevier, 2008

  • Kumar, B., Delaure, Y.,Crane, M.,High Performance Computing of Multiphase Flow,ERCIM News, Vol. 74, pp 43-44, July 2008

  • Kumar, B., Crane, M., Delaure, Y.,On the Development of Object Oriented Parallel Penta-diagonal Preconditioned Krylov Subspace (K- S) Solvers,ESM 2008, Le Havre France, pp 348-353,27-29 Oct, 2008

  • Barat A., Crane M., Ruskin H.J.,Quantitative multi-agent models for simulating protein release from PLGA bioerodible nano- and microspheres,Journal of Pharmaceutical and Biomedical Analysis, Vol 48(2), pp361-368, Elsevier, 2008.

  • Barat A., Ruskin H.J. and Crane M.,3D Multi-Agent Models for Protein Release from PLGA Spherical Particles with Complex Inner Morphologies,Theory in Biosciences, Vol 127(2), pp95-105, Springer Verlag, 2008.

  • Daly, J., Crane, M., Ruskin, H.J.,Random Matrix Theory Filters in Portfolio Optimization: A Stability and Risk Assessment, Physica A., 387, pp4248-4260, 2008.

  • Matos, J.-A., Gama, S., Ruskin, H.J., Sharkasi, Crane, M., Time and scale Hurst exponent analysis for financial markets,Vol 387/15, pp3910-3915, Physica A: Statistical and Theoretical Physics, Elsevier, 2008

  • Perrin D., Ruskin H.J., Crane M. and Walshe R.,Epigenetic modelling,ERCIM News No. 72, January 2008.

  • Kerr, G., Ruskin, H.J., Crane, M.,Techniques for Clustering Gene Expression data,Computers in Biology and Medicine, Vol 38/3, pp 283-293, Elsevier 2008

  • Hecquet D., Ruskin, H.J., Crane, M.,Bernaschi et al.,Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection,, 38(2), p282, Computers in Biology and Medicine, 2008

  • Gunning, P, Horgan, J.M, and Keogh G.,An Implementation Strategy for Efficient Convergence of the Lavallée and Hidiroglou Stratification,Journal of Official Statistics,pp 213-228,2008

  • Editors Wang R. and Ruskin H.J., Special Issue on Modelling Complex Systems, International Journal of Modelling, Identification and Control, Vol 1, No 3, 2008

  • Conlon, T., Ruskin, H.J., Crane, M. Multiscaled Cross-Correlation Dynamics in Financial Time Series,European Conference on Complex Systems (ECCS08), Jerusalem, Israel, September 14-19, 2008

  • Perrin, D., Ruskin, H.J., Crane, M.,Towards Epigenetic Modelling: An Initial Map,IET Conference on Synthetic Biology, Systems Biology and Bioinformatics (BioSysBio 2008), London, April 20-22, 2008

  • Hecquet D., Ruskin H.J., Crane M., Response to the comments by Bernaschi et al. on “Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection, Computers in Biology and Medicine, Vol 38/2, p282, 2008

  • Matos J.-A., Gama S., Ruskin H.J., Sharkasi A., Crane M., Time and scale Hurst exponent analysis for financial markets, Vol 387/15, pp3910-3915, Physica A: Statistical and Theoretical Physics, Elsevier, 2008

  • Murphy J.T., Walshe R. and Devocelle M., An Agent Based Approach to Modelling Microbial Ecosystems, ERCIM News No. 73:39-40, April 2008.

  • Murphy J.T., Walshe R. and Devocelle M., A Novel Cellular Model of Methicillin-Resistant S. aureus (MRSA) for Predicting Antibiotic Susceptibility, Genomes 2008 - Functional Genomics of Microorganisms conference, Institut Pasteur, Paris, France, April 8-11 2008.

  • Kerr G., Ruskin H.J. and Crane M., Pattern Discovery in Gene Expression Data, in Wang, H.F. (Ed), Intelligent Data Analysis: Developing New Methodologies Through Pattern Discovery and Recovery, Idea Group Publishing Ltd, 2008, ISBN 978-1599049823.

  • 2007
     

  • Quinn N., Killen L., Buckley F.,Modelling fat and protein concentration curves for Irish dairy cows,Irish Journal of Agricultureal and food Research 45: 13-23, 2007

  • Murphy J.T., Walshe R. and Devocelle M. (2007), Agent-Based Model of Methicillin-Resistant Staphylococcus aureus and Antibiotics in Batch Culture, Proceeedings of the 21st Annual European Simulation and Modelling Conference, Eurosis-ETI, pp. 409-414, 2007.

  • Conlon T., Ruskin H.J. and Crane M. (2007), Random matrix theory and hedge fund portfolio optimisation, Physica A 382(2):565-576, 2007.

  • Daly C. and Horgan J.M. (2007), Profiling The Plagiarists: An Examination of the Factors that Lead Students to Cheat, Journal Of Educational Research 36:39-50, 2007.

  • Deo P. and Ruskin, H.J. (2007), Performance evaluation of heterogeneous motorized traffic at urban single-lane junctions and roundabouts, ERCIM News No. 68, January 2007, pp.28-29.

  • Feng Y., Liu Y., Deo P. and Ruskin H.J. (2007), Heterogeneous traffic flow model for a two lane roundabout and controlled intersection, International journal of modern physics C (IJMPC) 18(1):107-118, January 2007. (link)

  • Gunning P. and Horgan J.M. (2007), Choosing the Strata when Auditing: An Example Using Excel, Irish Accounting Review 12(1):53-65, 2007.

  • Gunning P. and Horgan J.M. (2007), Improving the Lavallée and Hidiroglou Algorithm for Stratification of Skewed Populations, Journal of Statistical Computation and Simulation 4(77):277–291.

  • Hecquet D., Ruskin H.J. and Crane, M. (2007). Optimisation and parallelisation strategies for Monte-Carlo simulation of HIV Infection, Computers in Biology and Medicine, 37(2007):691-699, May 2007.

  • McMahon N., Crane M., Ruskin H.J. and Crane L. (2007), The Importance of Boundary Conditions in the Simulation of Dissolution in the USP Apparatus., Simulation Modelling Practice and Theory, 15(3):247-255, March 2007.

  • Perrin D., McMahon N., Crane M., Ruskin H.J., Crane L. and Hurley B. (2007), The Effect of a Meteorological Tower on its Top-Mounted Anemometer. Applied Energy, 84(4):413-424, April 2007.

  • Yu D., Ghita O., Sutherland A. and Whelan P.F., A New Manifold Representation for Visual Speech Recognition, LNCS 4673:374-382, 2007.

  •  
     

    2006
     

  • Quinn N., Killen L., Buckley F.,Empirical algebraic modelling of Irish dairy cows,Livestock Science103: 141-147,2006

  • Awad G., Han J. and Sutherland A. (2006). A Unified System for Segmentation and Tracking of Face and Hands in Sign Language Recognition, Proceedings International Conference on Pattern Recognition, ICPR, Hong Kong, China, 20-24 August 2006, pp. 239 - 242. DOI 10.1109/ICPR.2006.194.

  • Barat A., Ruskin H.J. and Crane, M., Probabilistic Models for Drug Dissolution Part 1: A Review of Monte-Carlo & Cellular Automata Approaches, Simulation Modelling Practice and Theory (SIMPAT), 14(7):843-856, 2006.

  • Barat A., Ruskin H.J. and Crane M., Probabilistic Models for Drug Dissolution Part 2: Modelling a Soluble Binary Drug Delivery System Dissolving in vitro, Simulation Modelling Practice and Theory (SIMPAT), 14(7):857-873, 2006.

  • Callaghan A. (2006). Emergent Properties of the Human Immune Response to HIV Infection: Results from Multi-Agent Computer Simulations, ERCIM News No. 64, January 2006.

  • Coogan T. and Sutherland A. (2006). Transformation Invariance in Hand Shape Recognition, Proceedings of International Conference on Pattern Recognition, ICPR, Hong Kong, China, 20-24 August 2006, pp. 485 - 488. DOI 10.1109/ICPR.2006.1134.

  • Coogan T., Awad G., Han J. and Sutherland A. (2006). Real Time Hand Gesture Recognition Including Hand Segmentation and Tracking, LNCS 4291:495-504, 2006.

  • Coyle M. and Tuohey W.G. (2006). Software development projects - Portfolio selection & staffing with tool support, Projects & Profits – The ICFAI University Press, Rs. 60, 75-86.

  • Deo P. and Ruskin H.J. (2006). Comparison of Homogeneous and Heterogeneous Motorised Traffic at Signalised and Two-way Stop control Single lane Intersection, M. Gavrilova et al. (Eds.): ICCSA 2006, LNCS 3980, pp. 622-632, 2006.

  • Deo P. and Ruskin H.J. (2006). Simulation of Heterogeneous Motorised Traffic at a Signalised Intersection, S. El Yacoubi et al (Eds.) ACRI 2006, LNCS 4173, pp. 522-531, 2006.

  • Han J., Awad G. and Sutherland A. (2006). Automatic Skin Segmentation for Gesture Recognition Combining Region and Support Vector Machine Active Learning, In proceedings 7th International Conference on Automatic Face and Gesture Recognition, FG2006, pp 243-248, 2006.

  • Matos J.A.O., Gama S.M.A., Ruskin H.J., Sharkasi A. and Crane, M. (2006). Correlation of worldwide markets' entropies: time-scale approach, Proceedings of the Workshop Perspectives on Econophysics, pp9-22, University of Evora Press, ISBN 989-95091-0-8, 2006.

  • Meagher D.P., Hashmi M.S. and Tuohey W.G. (2006). Regulatory Considerations and Business Implications for Automated System Suppliers, Pharmaceutical Engineering, pp24-36, November/December 2006.

  • O'Leary C., Humphrys M. and Walshe R. (2006). Collaborative Online Development of Modular Intelligent Agents, ERCIM News No. 64, January 2006.

  • Perrin D. (2006). Agent-Based Modelling of Viral Infection, ERCIM News No. 64, January 2006.

  • Perrin D., Ruskin H.J., Burns J. and Crane M. (2006). An agent-based approach to immune modelling, 2006 International Conference on Computational Science and its Applications (ICCSA 2006), M. Gavrilova et al. (Eds.): ICCSA 2006, LNCS 3980, pp. 612-621, 2006.

  • Perrin D., Ruskin H.J. and Crane M., An agent-based approach to immune modelling: Priming individual response, selected proceedings of Third International Conference on Modeling and Simulation (ICMS06), pp. 81-86, ISBN 975-00803-7-8, 2006.

  • Perrin D., Ruskin H.J. and Crane M., HIV Modelling - A Parallel Implementation of a Lymph Network, selected proceedings of The Third International Conference on Cluster and Grid Computing Systems (CGCS 2006), pp. 84-89, ISBN 975-00803-6-X, 2006.

  • Ruskin H. and Burns J. (2006). Network Emergence in Immune System Shape, ERCIM News No. 64, January 2006.

  • Ruskin H. and Burns, J. (2006). Weighted networks in immune system shape space, Physica A, The Journal of Statistical Mechanics and its Applications, 365(2):549-555, 2006.

  • Ruskin H. and Walshe R. (2006). Introduction to the Special Theme, ERCIM News No. 64, January 2006.

  • Sharkasi A., Crane M., Ruskin H. and Matos J.A.O. (2006). The Reaction of Stock Markets to Crashes and Events: A Comparison Study between Emerging and Mature Markets using Wavelet Transforms, Physica A: Statistical and Theoretical Physics, Elsevier, Vol. 368, No. 2, pp 511-521.

  • Sharkasi A., Crane M. and Ruskin H. (2006). Apples and Oranges: the Difference Between the Reaction of Emerging and Mature Markets to Crashes, Proceedings of the Third Nikkei Econophysics Symposium - Practical Fruits of Econophysics, Tokyo, Japan, 2006. Hideki Takayasu(Ed.), Springer-Verlag, ISBN: 104-431-28914-3. (attendance funded by Nikkei)

  • Sharkasi A., Ruskin H.J and Crane, M. (2006). Long-term memory in the Irish market (ISEQ): evidence from wavelet analysis, arXiv:physics/0607182 v1 20 Jul 2006.

  • Walshe R. (2006). Modelling Bacterial Growth Patterns in the presence of Antibiotic, In Proceedings of 11th IEEE International Conference on Engineering of Complex Computer Systems (ICECCS 2006), IEEE Computer Society, pp 177-186.

  • Wang R. and Ruskin H.J. (2006). Modelling Traffic Flow at Multi-Lane Urban Roundabouts, International Journal of Modern Physics C [Computational Physics and Physical Computation], Vol. 17, No. 5 (2006) 693-710.


  •  
     

    2005
     

  • Barat A., Ruskin H.J. and Crane M., Modelling the in vitro Dissolution of Soluble Binary Drug Delivery Systems using Direct Monte Carlo techniques, In: Hill, D.R.C., Barra, V., Traore, M.K., (Eds): Open International Conference on Modeling and Simulation - OICMS 2005, 12-15.6.2005, Clermont-Ferrand, France, pp377-385, 2005.

  • Callaghan A. (2005). Agent-Based Modelling applied to HIV/AIDS, ERCIM News No. 60, January 2005.

  • Daly, C. and Horgan, J. (2005) A technique for detecting plagiarism in computer code, The Computer Journal, 48(6), pp. 662-666.

  • Deo, P. and Ruskin, H. J., (2005). Space-requirement Implications for Heterogeneous Traffic Manoeuvres, Proceedings of the International Conference on Computational Science and Its Applications - ICCSA 2005, Gervasi,O., Gavrilova,M., Kumar, V., Lagana, A., Lee, H.P., Mun, Y., Taniar, D., Tan, C.J. (Eds), Lecture Notes in Computer Science, Springer, Vol 3482, Pg 196, ISBN 3540258620

  • Gunning, P., Horgan, J.M. and Keogh, G. (2005) Efficient Pareto Stratification , The Mathematical Proceedings of the Royal Irish Academy, 106(2), The Royal Irish Academy.

  • Gunning, P. and Horgan, J.M. (2005) Improving the Lavallee Hidiroglou Algorithm for Stratification of Skewed Population, Journal of Statistical Computation and Simulation, 77(4), pp. 277-291.

  • Kerr G. (2005). BAIT: Bacteria - Antibiotic Interaction Tool, ERCIM News No. 60, January 2005.

  • Mathuna, D. and Horgan, J.M. (2005). Seasonal Allergic Study Results of Questionable Relevance to Homeopathy, The Annals of Pharmocotherapy, Vol. 39, 736-738.

  • O'Mongain, E. and Tuohey, L. (April 2005). Extracting Maximum Information from Airborne Remote Sensing, ERCIM News No. 61.

  • Quinn N., Killen L. and Buckley F., (Feb 2005) Modelling Lactation Curves for Irish Dairy Cows, Performance recording of animals: State of the art, 2004. Wageningen Academic Publishers, The Netherlands pp. 247-252.

  • Quinn N., Killen L. and Buckley F., (March 2005) Modelling Liveweight for Irish Dairy Cows, Proceedings of Agricultural Research Forum 2005, Tullamore, Co.Offaly. Pg 43.

  • Quinn N., Killen L. and Buckley F., (May 2005) Modelling Liveweight change over a Lactation in Irish Dairy Cows., Book of Abstracts of the 56th Annual Meeting of the European Association of Animal Production, Uppsala Sweden. Pg. 119.

  • Quinn N., Killen L. and Buckley F., 2005. Empirical Algebraic Modelling of Lactation Curves using Irish Data, Irish Journal of Agricultural and Food Research, pp. 1-13.

  • Quinn N., Killen L. and Buckley F. (July 2005). Statistical Modelling of Fat and Protein Content Curves for Irish Dairy Cows, In Proceedings of the 25th European Meeting of Statisticians 24th – 28th July 2005, p. 437.

  • Ruskin, H., Burns, J., Weighted networks in immune system shape space, Physica A: The Journal of Statistical Mechanics and Its Applications, 365(2), pp. 549-555.

  • Ruskin, H., Burns, J., 2005. Network Emergence in Immune System Shape Space, Gervasi O., et al. (eds.): Lecture Notes in Computer Science, Vol. 3481. Springer-Verlag, Berlin Heidelberg New York, pp. 1254-1263.

  • Shamaie A. and Sutherland A. (2005). Hand tracking in bimanual movements, Image and Vision Computing, Vol. 23(13), 1131-1149.

  • Sharkasi, A., Ruskin, H. and Crane, M. (2005). Interrelationships among International Stock Market Indices: Europe, Asia and the Americas. International Journal of Theoretical and Applied Finance (IJTAF). Vol 8(5),Pg 1-18.

  • Sharkasi A., Crane M. and Ruskin H.J., Apples and Oranges: the Difference Between the Reaction of Emerging and Mature Markets to Crashes, in Takayasu, Hideki (Ed.), Proceedings of 3rd Nikkei Econophysics Symposium - Practical Fruits of Econophysics, Lecture Notes in Computer Science, Springer 2005, pp38-42, ISBN: 4-431-28914-3, 2005.

  • Tuohey, W.G. (2005) Picard style iteration for anisotropic H-functions, Journal of Quantitative Spectroscopy and Radiative Transfer, Vol 96 Pg 85-101

  • Wang, R. and Ruskin, H.J. (2005). Modelling traffic flow at multilane urban roundabouts , International Journal of Modern Physics C, (in press)

  •  
     

    2004
     

  • Burns, J. and Ruskin, H. (2004) Network Topology in Immune System Shape Space, In: Bubak, M.; Albada, G.D.v.; Sloot, P.M.A.; Dongarra, J. (Eds.): Lecture Notes in Computer Science, Vol. 3038. Springer-Verlag Pg. 1094-1101

  • Burns, J. and Ruskin, H. (2004)  Diversity Emergence and Dynamics During Primary Immune Response: A Shape Space, Physical Space Model. Theory in Biosciences, Vol 123/2 Pg 183-194, Elsevier

  • Burns, J., Ruskin, H., (2004), A Stochastic Model of the Effector T Cell Lifecycle, In: Sloot P.M.A., Chopard, B. and Hoekstra A.G., (eds.): Cellular Automata, Lecture Notes in Computer Science, Vol. 3305. Springer-Verlag, Berlin Heidelberg (2004) 454-463

  • Crane, M., Crane, L., Healy, A.M., Corrigan, O.I., Gallagher, K.M. and McCarthy, L.G., (2004) A Pohlhausen Solution for the Mass Flux From a Multi-layered Compact in the USP Drug Dissolution Apparatus, Simulation Modelling Practice and Theory (SIMP&T), Vol. 12/6 Pg 397-411, Elsevier, 2004

  • Crane M., Hurley N., Crane L., Healy A.M., Corrigan, O.I., Gallagher, K.M. and McCarthy, L.G. (2004) Simulation of the USP drug delivery problem using CFD: experimental, numerical and mathematical aspects. Simulation Modelling Practice and Theory (SIMP&T), 12/2, pp.147-158, Elsevier

  • Daly, C. and Horgan, J., (2004), A Technique for Measuring Plagiarism in Automated Learning Environments, International Journal of Applied Mathematics and Computer Science, University of Zielona Gora Press. (in press)

  • Daly, C. and Horgan, J., (2004) A Statistical Analysis of an Automated Learning Environment, IEEE Transactions on Education, Vol 47(1) Pg 10-17, IEEE

  • Feng Y., Ruskin H.J. and Liu Y.,  (2004) Multiple Parameterisation of Human Immune Response in HIV: Many-Cell Models., Proceedings of the International Conference on Computational Science and Its Applications - ICCSA 2004, Laganà, A.; Gavrilova, M.L.; Kumar, V.; Mun, Y.; Tan, C.J.K.; Gervasi, O. (Eds.), Lecture Notes in Computer Science,  Springer, May 2004, Vol. 3045, Pg 498-507, ISBN: 3-540-22057-7

  • Gunning, P. and Horgan, J. M. (2004). A Simple Algorithm for Stratifying Skewed Populations, Survey Methodology. 30, 2, 159-166.

  • Gunning, P., Horgan, J.M., and Keogh, G. (2004) Obtaining Stratum Boundaries in Skewed Populations, Proceedings Joint Statistical Meeting, Toronto, Canada

  • Gunning, P. and Horgan J.M. Un Nouvel Algorithme pour la construction de bornes de stratification dans les populations asymetriques, Techniques d'Enquete, 30, 2, 177-185.

  • Gunning, P., Horgan, J. M., and Yancey, W. (2004) A Simple Method for Setting Stratum Boundaries for Statistical Auditing, Proc. Of Amer, Acc, Association Southern Region Meeting, Austin Texas.

  • Gunning P. and Horgan J.M., (2004) An Algorithm for Obtaining Strata with Equal Coefficients of Variation in COMPSTAT 2004 - Proceedings in Computational Statistics 16th Symposium Prague, Czech Republic, Antoch, Jaromir (Ed.), Pg 1123-1130, Physica-Verlag, Springer, ISBN: 3-7908-1554-3.

  • Gunning, P., Horgan, J.M. and Yancey, W , (2004) Geometric Stratification of Accounting Data, de Contaduria y Administracion Pg11-21

  • Harte, R. and Keogh, G. (2004) Touche Rouche in Bulletin of Korean Mathematical Society, 40(2), Pg215-221, Korean Mathematical Society.

  • Keogh G., Sharifi S., Ruskin H. and Crane M. (2003) Epochs in Market Sector Index Data - Empirical or Optimistic? Proceedings of the 2nd Nikkei Econophysics Symposium - Application of Econophysics, H. Takayasu (Ed.) Lecture Notes in Computer Science, Springer, November 2003, Pg 83-89, ISBN 4-431-14028-X

  • Matos J. A. O., Gama S. M.A., Ruskin H. J., and Duarte J.A.M. S. (2004) An Econophysics Approach to the Portuguese Stock Index - PSI-20., 342, Pg665-676, Physica A, Elsevier.

  • O'Leary, C., Humphrys, M. and Walshe, R., (2004) Constructing an animat mind using 505 sub-minds from 234 different authors,Proceedings of the Eighth International Conference on the Simulation of Adaptive Behavior, From Animals to Animats 8 (SAB 2004), S. Schaal, A.J. Ijspeert, A. Billard, S. Vijayakumar, J. Hallam, and J.-A. Meyer (Eds.), Pg 39-49, MIT Press, Cambridge, ISBN 0-262-69341-0, 2004

  • Podesta, K., Crane, M. and Ruskin, H., (2004) Running EMBOSS on a cluster of workstations, Proceedings of the International Conference on Computational Science and Its Applications - ICCSA 2004, Laganà, A.; Gavrilova, M.L.; Kumar, V.; Mun, Y.; Tan, C.J.K.; Gervasi, O. (Eds.), Lecture Notes in Computer Science,  Springer, May 2004, Vol. 3045, Pg 473-480, ISBN: 3-540-22057-7

  • Quinn N., Killen L. and Buckley F., (2004) Statistical Modelling of Lactation Curve Data , in COMPSTAT 2004 - Proceedings in Computational Statistics 16th Symposium Prague, Czech Republic, Antoch, Jaromir (Ed.), Pg1677-1684, Physica-Verlag, Springer, ISBN: 3-7908-1554-3.

  • Shamaie, A. and Sutherland, A. (2004) A Dynamic Model for Real-time Tracking of Hands in Bimanual Movements, Gesture-Based Communication in Human-Computer Interaction, Springer-Verlag Heidelberg, 2004 .

  • Shamaie, A. and Sutherland, A. (2004) Bayesian Fusion of Hidden Markov Models for Understanding Bimanual Movements, The 6th Int'l Conference on Automatic Face and Gesture Recognition, Seoul, Korea, May 17-19, 2004

  • Sharifi S., Crane M., Shamaie A. and Ruskin H.J. (2004) Random Matrix Theory for Portfolio Optimization: A Stability Approach, Physica A, Vol. 335(3-4) Pg629-643, Elsevier

  • Sharkasi, A., Ruskin, H. and Crane, M. (2004) Interdependence between Emerging and Major Markets, in COMPSTAT 2004 - Proceedings in Computational Statistics 16th Symposium Prague, Czech Republic, Antoch, Jaromir (Ed.), Physica-Verlag, Springer, ISBN: 3-7908-1554-3.

  • Walshe, R., Humphrys, M. and O'Leary, C. (2004) Constructing Complex Brains: Building minds using sub-minds from biotechnology authors in Proceeding of The Symposium on Professional Practice in AI, E. Mercier-Laurent, J. Debenham (Eds.), ISBN:2-907801-05-8, IFIP Press 2004

  •  
     

    2003
     

  • Burns J., Ruskin H.J. (2003) A Model of Immune Suppression and Repertoire Evolution. Proceedings of the International Conference on Computational Science 2003, (ICCS03), St. Petersburg, Russia, June 1-4.

  • Burns J., Ruskin H.J. (2003) Viral Strain Diversity and Immune Response - a Computational Model. Proceedings of the IASTED International Conference on Biomedical Engineering, Salzburg, Austria, June 25-27, 2003

  • Feng Y., Ruskin H. J. and Zhu B. (2003) Persistence Measures for 2D Soap Froth. International Journal of Modern Physics C, Vol. 14, No. 9, Pg1-8, November 2003, World Scientific Publishing Co.

  • Horgan J.M. (2003) A List-Sequential Sampling Scheme with Applications in Financial Auditing, IMA: J. of Mang. Maths, 14(1) Pg 31-48.

  • Horgan J.M. (2003) A Criterion for an Efficient Ratio Estimator with Poisson sampling, Pakistan Journal of Information and Technology (PJIT), Vol. 2, No. 1, Pg1-18.

  • McMahon N., Crane M., Ruskin H.J. and Crane L. (2003) The Mechanics of Drug-Dissolution. Proceedings in Applied mathematics and Mechanics (PAMM), Vol. 3, Issue 1, December 2003, p. 392-393.

  • Quinn N., Killen L., Buckley F. (2003) The Factors affecting lactation curves of Irish Dairy Cows. Proceedings of Agricultural Research Forum 2003, Tullamore, Co.Offaly. Pg 20.

  • Shamaie, A. and Sutherland, A., Learning and Understanding Bimanual Movements, ERCIM News, European Research Consortium for Informatics and Mathematics, No. 55, October 2003

  • Shamaie, A. and Sutherland, A., A Dynamic Model for Real-time Tracking of Hands in Bimanual Movements, 5th International Workshop on Gesture and Sign Language based Human-Computer Interaction, Genova, Italy, 15-17 April 2003.

  • Shamaie, A. and Sutherland, A., Accurate Recognition of Large Number of Hand Gestures", 2nd Iranian Conference on Machine Vision and Image Processing, K.N. Toosi University of Technology, Tehran, Iran, 13-15 February 2003.

  • Sharifi, S., Shamaie, A., and Crane, M., Noise in the Correlation Matrix: A Simulation Approach", 23rd Conference on Applied Statistics in Ireland, Mullingar, Ireland, May 2003.

  • Wang, R. and Ruskin, H. J. (2003) Modelling Traffic Flow at a Multilane Intersection, Proceedings of International Conference on Computational Science and its Applications 2003, (May18-21, 2003. Montreal, Canada), Lecture Notes in Computer Science (LNCS), Springer-Verlag Heidelberg. ISSN: 0302-9743. Vol. 2667 / 2003. Pg 577- 586.

  • Wang, R. and Ruskin, H. J. (2003) Modelling Traffic Flow at a Two-lane Roundabout, Proceedings of International Conference on Computer Science, Software Engineering, Information Technology, e-Business and Applications, (June 5-7, 2003, Rio de Janeiro, Brazil) Pg 575-580 ISBN: 0-9742059-0-7.

  •  
     
     
     
     
     

    2002
     

  • Feng Y., Ruskin H.J. and Zhu B. (2002) Virtual Phase Dynamics for Constrained Geometries in a Soap Froth. ICCS 2002, (Ed. Sloot P.M. A. et al.) pub. in LNCS (2002) 2329, 399. Springer-Verlag, ISBN 3-540-43592, ISSN 0302-9743

  • Horgan, J., Waldron, J. (2002), The Unexpected Properties of Expectation,Indian Journal of Pure and Applied Mathematics, Vol 133/9, Pg1373-8

  • Liu Y. and Ruskin H. J. (2002) A Mesoscopic Approach to Modelling Immunological Memory. International Conference on Computational Science ICCS 2002, (Ed. Sloot P.M. A. et al.) pub. in Lecture Notes in Computer Science, LNCS (2002) 2329, 127. Springer-Verlag ISBN 3-540-43592, ISSN 0302-9743

  • Mannion R., Ruskin H.J. and Pandey R.B. (2002) Effects of Viral Mutation on Cellular Dynamics in a Monte Carlo Simulation of HIV Immune Response Model in Three Dimensions, Theory in Biosciences 121, 237, Elsevier

  • Ruskin H.J. and Feng Y. (2002) Constrained geometries in soap froth dynamics. Physica A 314, 362, Elsevier

  • Ruskin H.J. and Wang R. (2002) Modelling Traffic Flow at an Urban Unsignalised Intersection. ICCS 2002, (Ed. Sloot P.M. A. et al.) pub. in LNCS (2002) 2329, 381 Springer-Verlag., ISBN 3-540-43592, ISSN 0302-9743

  • Ruskin H.J. and Wang R. (2002) Effect of Driver Behaviour on Cross-Traffic. Proc. IASTED Intl. Conf. Proceedings on Modelling, Identification and Control (Ed. Hamza M.H.), p.54

  • Ruskin H.J. , Pandey R.B. and Liu Y. (2002) Viral load and stochastic mutation in a Monte Carlo simulation of HIV. Physica A 311, 213, Elsevier

  • Tuohey, W.G. (2002). Benefits & Effective Application of Software Engineering Standards, Software Quality Journal, Vol. 10, Issue 1, 47-68.

  • Wang R. and Ruskin H.J. (2002) Modelling traffic flow at a single-lane urban roundabout. Computer Physics Communications 147, pp. 570-576, Elsevier.

  •  
     
     
     
     
     

    2001
     

  • Daly, C., Horgan, J., (2001), Automatic Plagiarism Detection, Applied Informatics, Pg255-259

  • Horgan J.M. (2000) Auditing Y2K: A Sampling Fig Leaf, Aus. CPA, Nov., Pg 46-47.

  • Hurley, N., Crane, L., Crane, M., Healy, A.M., Corrigan, O.I., Gallagher, K.M. and McCarthy, L.G., Modelling drug delivery systems using finite element analysis, in Proceedings of the 4th International Eurosim 2001 Congress, Delft, June 2001 (ISBN: 90-806441-1-0).

  • Ruskin H.J., Feng Y. and Zhu B. (2001) Modelling froth dynamics; persistence measures. Physica A 293, pp. 315 - 323, Elsevier.

  • Shamaie, A, Wu Hai, and Sutherland, A., Hand Gesture Recognition for Human Computer Interaction", ERCIM News, European Research Consortium for Informatics and Mathematics, No. 46, July 2001.

  • Shamaie, A., and Sutherland, A., Graph-based Matching of Occluded Hand Gestures, IEEE Applied Imagery Pattern Recognition Workshop (AIPR 2001), Washington DC, USA, 10-12 October 2001.

  • Walshe, R., (2001) The Origin of the Speeches: language evolution through collaborative reinforcement learning, in Proceedings of Intelligent Virtual Agents, Third International Workshop, IVA 2001, A. de Antonio, R. Aylett \& D. Ballin (Eds.), LNCS 2190, ISBN 3-540-42570-5, Springer

  • Wang, R., and Ruskin, H. J. (2001) Modeling Traffic Flow at a Single-lane Urban Roundabout, Abstracts of Europhysics Conference on Computational Physics (CCP2001), September 5th-8th, Aachen, Germany, ISBN 3-00-008236-0.

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PRESENTATIONS (2016, 2014, 2013, 2012, 2011, 2010, 2009, 2008, 2007, 2006, 2005, 2004, 2003, 2002, 2001)

    2016
     
  • Hillmann, A., Crane, M. and Ruskin, H.J. (2016), New dimensions – modelling interrupted antiretroviral treatment using cellular automata, 15th European Conference on Computational Biology 2016(poster). DOI= 10.7490/f1000research.1113098.1.

  • Mamkaitis, A., Bezbradica, M. and Helfert, M. (2016), Urban Enterprise: a review of Smart City frameworks from an Enterprise Architecture perspective, IEEE International Smart Cities Conference (ISC2), Italy, 12-15 September 2016.

  • Li, N., Crane, M., Gurrin, C. and Ruskin, H.J. (2016), Finding Motifs in Large Personal Lifelogs, In AH’16: Proceedings of the 7th Augmented Human International Conference, Geneva, Switzerland, ACM, New York, NY, USA, Article 9, 8 pages. DOI=http://dx.doi.org/10.1145/2875194.2875214.

  • Balaur (Roznovăţ), I.A., Saqi, M., Lysenko, A., Mazein, A., Barat, A., Bratfalean, D., Houston, P., Rawlings, C.J., Ruskin, H.J. and Auffray, C. An integrative graph database framework for data management in Systems Biology and Medicine, GraphConnect, London, UK, 26th April 2016.

  • 2014
     
  • Bezbradica, M. and Ruskin, H.J., Modelling Impact of Morphological Urban Structure and Cognitive Behaviour on Pedestrian Flows, 14th International Conference on Computational Science and Its Applications (ICCSA 2014), Guimaraes, Portugal, 30thJune - 3rd July 2014.

  • Roznovăţ, I.A. and Ruskin, H.J., A Computational Analysis on Methylation Inhibition during Intestinal Cancer Initiation, Empowering Systems Medicine Through Optimal Computational Modelling Workshop, The 2014 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), Belfast, UK, 2nd - 5th November 2014.

  • Roznovăţ, I.A. and Ruskin, H.J., LogisticCrypt - a Logistic Model of Intestinal Crypt Structure, Empowering Systems Medicine Through Optimal Computational Modelling Workshop, The 2014 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), Belfast, UK, 2nd-5th November 2014.

  • Ruskin, H.J., Perrin, D. and Roznovăţ, I.A., Building Cross-Scale Models of Epigenetic Mechanisms, Empowering Systems Medicine Through Optimal Computational Modelling Workshop, The 2014 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), Belfast, UK, 2nd-5th November 2014.

  • Roznovăţ, I.A. and Ruskin, H.J., Toward A Multiscale Model for Colon Cancer Dynamics, Modelling Approaches in Epigenetics 2014, Cambridge, UK, 20th - 21st March, 2014.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Random Matrix Ensembles of Time Correlation Matrices to Analyze Visual Lifelogs, Poster, The 20th International Conference on Multimedia Modeling (MMM'14), Dublin, Ireland, 8th - 10th January, 2014.

  • 2013
     
  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Application of Statistical Physics for the Identification of Important Events in Visual Liflogs, The IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shanghai, China, 18th - 21st December 2013.

  • Roznovăţ, I.A. and Ruskin, H.J., Methylation inhibitors and Carcinogens in an Agent-based model for Colon Crypt Dynamics during Cancer Development, UKSim/AMSS 7th European Modelling Symposium (EMS2013), Manchester, UK, 20th - 22nd November 2013.

  • Roznovăţ, I.A. and Ruskin, H.J., Dynamics of Genetic and Epigenetic Events in a Network-based framework for Colon Cancer Initiation, European Conference on Complex Systems 2013 (ECCS'13), Barcelona, Spain, 16th - 20th September 2013.

  • Roznovăţ, I.A. and Ruskin, H.J., Interdependencies of Genetic and Epigenetic Mechanisms in a framework for Colon Cancer Dynamics, Workshop "Young Researchers Network on Complex Systems (YRNCS)", European Conference on Complex Systems 2013 (ECCS'13), Barcelona, Spain, 16th - 20th September 2013.

  • Szczesna, K., Sandoval, J., Modhukur, V., Kull, M., Rajashekar, B., Perrin, D., Barat, A., Raghavan, K., Roznovăţ, I.A., Huertas, D., Vilo, J. and Ruskin, H.J., Complexity of Interdependent Epigenetic Signals in Cancer Initiation, Workshop "Complexity-NET projects: Interdisciplinary Challenges for Complexity Science", European Conference on Complex Systems 2013 (ECCS'13), Barcelona, Spain, 16th - 20th September 2013, presented by Roznovăţ, I.A..

  • Roznovăţ, I.A. and Ruskin, H.J., Dynamics of Genetic and Epigenetic Signals in Colon Cancer, Poster, The "Young Researchers Network on Complex Systems (YRNCS)" Workshop, European Conference on Complex Systems 2013 (ECCS'13), Barcelona, Spain, 16th - 20th September 2013.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Probabilistic Pharmaceutical Modelling: A Comparison Between Synchronous and Asynchronous Cellular Automata, 10th International Conference on Parallel Processing and Applied Mathematics (PPAM 2013), Warsaw, Poland, 8th - 11th September 2013.

  • Bezbradica, M., Stochastic Computational Modelling of Complex Drug Delivery Systems, invited talk to Royal College of Surgeons in Ireland (RCSI), July 2013.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Automatically Detecting "Significant Events" in Visual Lifelogs, 3-min-thesis Presentation, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2013.

  • Roznovăţ, I.A. and Ruskin, H.J., Interdependencies of Micromolecular Events in a framework for Colon Cancer Dynamics, 3-min-thesis Presentation, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2013.

  • Li, N., Crane, M., Ruskin, H.J. and Gurrin, C., Multiscaled Cross-Correlation Dynamics on SenseCam Lifelogged Images, Poster, The 19th International Conference on Multimedia Modeling (MMM'13), Huangshan, China, 7th-9th January 2013.

  • 2012
     
  • Li, N., Crane, M. and Ruskin, H.J. Automatically Detecting Significant Events on SenseCam, Ambient Assisted Living (AAL FORUM 2012), 24th - 27th September, 2012, Eindhoven, Netherlands.

  • Roznovăţ, I.A. and Ruskin, H.J., Ageing and micromolecular events in a Bayesian Network for Colon Cancer, The Virtual Institute of Bioinformatics (VIBE 2012), Dublin, Ireland, 2nd November 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., A Computational Model for Genetic and Epigenetic Signals in Colon Cancer, The Fifth International Workshop on Biomolecular Network Analysis (IWBNA), The IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), Philadelphia, USA, 4th-7th October 2012.

  • Perrin, D., Bezbradica, M., Crane, M., Ruskin, H.J. and Duhamel, C., High-Performance Computing for Data Analytics, 16th IEEE/ACM International Symposium on Distributed Simulation and Real Time Applications, Dublin, Ireland, October 2012.

  • Perrin, D. and Wilson, C., Emergence of Collaboration in the Iterated Prisoner's Dilemma, The 23rd Irish Conference on Artificial Intelligence and Cognitive Science (AICS 2012), Dublin, Ireland, 17th-19th September 2012.

  • Perrin, D., Large-scale social networks and High-Performance Computing, The 23rd Irish Conference on Artificial Intelligence and Cognitive Science (AICS 2012), Dublin, Ireland, 17th-19th September 2012.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., High-performance processing of dissolution data flows in large scale pharmaceutical models, The 23rd Irish Conference on Artificial Intelligence and Cognitive Science (AICS 2012), Dublin, Ireland, 17th-19th September 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., Bayesian Network for Interdependent Genetic and Epigenetic Signals in Colon Cancer, The 23rd Irish Conference on Artificial Intelligence and Cognitive Science (AICS 2012), Dublin, Ireland, 17th-19th September 2012.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., High-performance computing for cellular automata frameworks in pharmaceutical modelling, Poster, DCU Research Day, Dublin, Ireland, 12th September 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., Cross-talk between DNA methylation and Histone modifications in Colon Cancer, Poster, DCU Research Day, Dublin, Ireland, 12th September 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., Modelling the Genetic and Epigenetic Signals in Colon Cancer using a Bayesian Network, ECCS'12 (European Conference on Complex Systems 2012), Brussels, Belgium, 3rd - 7th September 2012.

  • Vasic, J. and Ruskin, H.J., Agent-based space-time discrete simulation of urban traffic including bicycles. The 1st International Workshop on Agent-based Mobility, Traffic and Transportation Models, Methodologies and Applications, ABMTRANS'12, Niagara Falls, Ontario, Canada, 27th -29th August 2012.

  • Perrin, D. and Ohsaki, H., Impact of mobility and topology on information diffusion in MANETs, 2012 IEEE Symposium on Computers and Communications, Cappadocia, Turkey, July 2012.

  • Bezbradica, M., Crane, M. and Ruskin, H. J., Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modellings, International Conference on High Performance Computing and Simulation (HPCS2012), Madrid, Spain, 2nd - 6th July 2012.

  • Vasic, J. and Ruskin, H.J., A Cellular Automata-Based Network Model for Heterogeneous Traffic: Intersections, Turns and Their Connection. Cellular Automata for Research and Industry, (ACRI 2012), Santorini, Greece, 24th - 27th September 2012.

  • Shakya, K., Ruskin, H. J. and O' Connell, M. J., Colon Cancer Research: Content Evaluation and Tool Development for Knowledge Management System, 3-min-thesis Presentation, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2012.

  • Shakya, K., O' Connell, M. J. and Ruskin, H. J., Data mining in Colon Cancer Research, Poster, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2012.

  • Bezbradica, M., Crane, M. and Ruskin, H. J., Controlled Drug Delivery Systems: A Probabilistic Approach for Modelling Coated Drugs, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., Modelling the Interdependencies of the Genetic and Epigenetic Signals in Colon Cancer using a Bayesian Network approach, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2012.

  • Roznovăţ, I.A. and Ruskin, H.J., Dynamics of Genetic and Epigenetic Signals in Colon Cancer, Poster, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland, 11th June 2012.

  • Bezbradica, M., Probabilistic modelling of controlled drug delivery systems, Invited talk to University of Belgrade, Faculty of Pharmacy, May 2012.

  • Shakya, K., O' Connell, M. J. and Ruskin, H. J., Content Evaluation and Tool Development for Knowledge Management Systems, Poster, O'Hare Presentation Ceremony, DCU, Dublin, Ireland, 4th April 2012.

  • Perrin, D. and Ohsaki, H., Decentralised communication in autonomous agent swarms, Twenty-sixth IEEE International Conference on Advanced Information Networking and Applications (AINA 2012), Fukuoka, Japan, 2012.

  • Bezbradica, M., Crane, M. and Ruskin, H. J., Modelling controlled DDS: A probabilistic model for ethylcellulose-coated beads, Poster, 8th World Meeting on Pharmaceutics, Biopharmaceutics and Pharmaceutical Technology, Istanbul, Turkey, 19th-22nd March 2012.

  • 2011
     
  • Perrin, D. and Ohsaki, H., Impact of randomness on information diffusion in Mobile Ad-Hoc Networks, Workshop of the IPSJ Technical Committee on Radio Communication Systems (RCS), Asahikawa, Japan, 2011.

  • Perrin, D. and Ohsaki, H., Decentralised communication in autonomous agent swarms, Workshop of the IPSJ Technical Committee on Communication Quality (CQ), Otaru, Japan, 2011.

  • Perrin, D. and Ohsaki, H., Applications of epidemic diffusion to complex systems: from communication networks to autonomous exploratory robots, Eight International Conference on Complex Systems (ICCS 2011), Boston, USA, 2011.

  • Perrin, D. and Ohsaki, H., A parallel approach to social network generation and agent-based epidemic simulation, Ninth Australasian Symposium on Parallel and Distributed Computing (AusPDC 2011), Perth, Australia, 2011.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Probabilistic modelling of drug delivery systems, Computational Biology and Innovation - PhD Symposium, UCD, Dublin, Ireland, 6th-7th December 2011.

  • Roznovăţ, I.A. and Ruskin, H.J., Complexity of Interdependent Epigenetic Signals in Cancer Initiation, Poster, Computational Biology and Innovation - PhD Symposium, UCD, Dublin, Ireland, 6th-7th December 2011.

  • Shakya, K., O' Connell, M. J. and Ruskin, H. J., Data mining in Colon Cancer Research, Poster, Computational Biology and Innovation - PhD Symposium, UCD, Dublin, Ireland, 6th-7th December 2011.

  • Ioudinkova, E. S., Barat, A., Pichugin, A., Markova, E., Pirozhkova, I., Lipinski, M., Ogryzko, V., Vassetzky, Y.S. and Razin, S.V., Comparative analysis of histone variants H2A.Bbd and macroH2A in open and closed chromatin domains suggest a distinct distribution, Poster, Histone Variants and Genome Regulation, Strasbourg, France, 12th-14th October 2011.

  • Vasic, J. and Ruskin, H.J., Combined motorised and bicycle traffic on a one-way road intersection - simulation and analysis. Complexity and the Future of Transportation Systems, Satellite Meeting of ECCS'11 (European Conference on Complex Systems 2011), Vienna, Austria, 15th September 2011.

  • Sîrbu, A., Ruskin, H. J. and Crane, M., An integrative framework for gene regulatory network inference, ECCS'11, Vienna, Austria, September 2011 (Presentation).

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Agent-based modelling in prediction of environmental influence on drug release, Poster, ECCS'11 (European Conference on Complex Systems 2010), Vienna, 12th - 16th September 2011.

  • Vasic, J. and Ruskin, H.J., A cellular automaton based network meta-model for mixed city traffic simulation. Poster Presentation, ECCS'11 (European Conference on Complex Systems 2011), Vienna, Austria, 12th - 16th September 2011.

  • Shakya, K., O' Connell, M. J. and Ruskin, H. J., Colon Cancer Research: Knowledge Discovery/ Data Mining and Phylogenetic Perspective, Poster, SCI-SYM Research Day (sci-sym.dcu.ie), DCU, Dublin, Ireland 24th June 2011.

  • Raghavan, K. and Ruskin, H.J., Computational Epigenetic Micromodel - Framework for Parallel Implementation and Information Flow. International Conference on Complex Systems 2011 (ICCS) , Boston, USA, June 2011

  • Shakya, K., O' Connell, M. J. and Ruskin, H. J., Content Evaluation and Tool Development for Knowledge Management System of Colon Cancer, Poster, Faculty Research Day, DCU, Dublin, Ireland, 24th May 2011. (Selected as Best Poster from the Department)

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Agent-based modelling of controlled drug release from ethylcellulose/pectin coated beads, Poster, DCU Research Day, Dublin, 12th May 2011.

  • Raghavan, K., Ruskin, H. J. and Perrin, D., Computational Analysis of Epigenetic Information in Human DNA Sequences. International Conference on Bioscience, Biochemistry and Bioinformatics 2011, February 2011.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Ethylcellulose/pectin coated microspheres in controlled drug delivery: agent based modelling, UKICRS (UK & Ireland Controlled Release Society) Symposium, Belfast April 13th, 2011.

  • Sîrbu, A., Ruskin, H. J. and Crane, M., Gene regulatory network inference by integrative evolutionary computation, 8th Symposium for Networks in Bioinformatics, Amsterdam University, Netherlands, April 2011 (Presentation)

  • Bezbradica M., Ruskin H.J. and Crane M. Modelling drug coatings: A parallel cellular automata model of ethylcellulose-coated microspheres, Proceedings of The International Conference on Bioscience, Biochemistry and Bioinformatics, ICBBB 2011, Singapore, 26th-28th February 2011.

  • 2010
     
  • Peyton, C., O'Mongain, E., and Tuohey,W.G., The development of a radiative transfer model for waters of varying depth, "From the Sea-Bed to the Cloud-Tops" - Remote Sensing and Photogrammetry Society Annual Conference with Irish Earth Observation Symposium, Cork, Ireland, 1st - 3rd September 2010.

  • Bezbradica, M., Ruskin, H.J., and Crane, M. Probabilistic models for dissolution of ethylcellulose coated microspheres, Proceedings of The European Simulation and Modelling conference, ESM' 2010, Hasselt, Belgium, 25th-27th October 2010.

  • Ruskin, H. J., Perrin, D., Raghavan, K. and Goasmat, F., Modelling Complex Epigenetic Changes. Poster Presentation, ECCS 2010, Lisbon, Portugal, September 2010.

  • Bezbradica, M., Ruskin, H.J. and Crane, M., Drug Dissolution Modelling Using Monte Carlo and Cellular Automata, Poster, Globe Forum, Dublin, 17th - 18th November 2010

  • Vasic, J., and Ruskin, H.J., Traffic Simulation with Focus on Pedal-Bicycles, Poster, ECCS'10 (European Conference on Complex Systems 2010), Lisbon, 13th - 17th September 2010.

  • Vasic, J., and Ruskin, H.J., Simulation of Traffic Including Bicycles, Poster, Globe Forum, Dublin, 17th - 18th November 2010

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Gene Regulatory Network Modelling with Evolutionary algorithms - An Integrative Approach, Poster, Globe Forum, Dublin, 17th - 18th November 2010

  • McGuinness E.D., Ruskin, H.J., Crane M., Effect of cell infection delay on treatment interruption models of within-host HIV progression, 3rd International Workshop on Systems Biology, NUI Maynooth, 2010.

  • Murphy, J.T., Walshe, R. and Devocelle, M. Computer simulations of resistance mechanisms in antibiotic-resistant bacterial populations, 8th Louis Pasteur Conference, Institut Pasteur, Paris, 2010.

  • Perrin D., Ruskin H.J., Crane M., Local Properties and Large-Scale Agent-Based HIV Simulations, International Conference on Bioinformatics, InCoB, September 26-28, 2010

  • Perrin, D., Ruskin H. J., and Crane, M. Model refinement through high-performance computing: an agent-based HIV example. International Conference on Bioinformatics (InCoB 2010). Tokyo, Japan. September 26-28, 2010

  • Perrin, D., and Ruskin H. J. Modelling Complex Epigenetic Changes. Epigenetics Europe. Dublin, Ireland. September 13-13, 2010

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Integrating Heterogeneous Gene Expression Data for Gene Regulatory Network Modelling , ECCS, September 2010, Lisbon.

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Integrating Heterogenous Microarray Data for Regulatory Network modelling , Advances in Microarray Technology, May 2010, Dublin.

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Wavelets for analysis of time series gene expression data , 2nd COST Action MP0801 “Physics of Competition and Conflicts”, May 2010, Bulgaria, poster presentation.

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Modelling Gene Regulatory Networks: an Integrative Approach , 2nd COST Action MP0801 “Physics of Competition and Conflicts”, May 2010, Bulgaria.

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Integrating heterogenous Gene Expression data for Regulatory Network modelling , VIBE, January 2010, Dublin, poster presentation.

  • 2009
     
  • Perrin, D., Ruskin, H.J. and Claude, B. Computer-based city model and control of epidemic spreads , The 9th Asia-Pacific Complex Systems Conference (Complex'09), Tokyo, Japan, November 4-7, 2009, presented by D. Perrin

  • Sîrbu, A., Ruskin, H.J. and Crane, M. Evolutionary algorithms in genetic regulatory network modelling with microarray data , The 9th Asia-Pacific Complex Systems Conference (Complex'09), Tokyo, Japan, November 4-7, 2009, presented by A. Sîrbu

  • Daly, J., Ruskin, H.J., Crane, M., Can random matrix filters be used for trading in the foreign exchange market?- A comparison of foreign exchange and stock portfolio filtering using forward validation, 1st COST Action MP0801 “Physics of Competition and Conflicts”, Rome, May 2009 – poster presented by J. Daly.

  • McMahon, N.M., Crane, L.J., Ruskin, H.J., Crane, M., D’Arcy, D.M., Healy, A.-M., Corrigan, O. A Numerical Model of a Drug Particle Dissolving in a Dissolution Test Apparatus, GAMM 2009, Gdansk, Poland, February 2009.

  • McGuinness, E.D., Ruskin, H.J., Crane, M. Increasing biological accuracy in models of HIV progression while minimising complexity, presentation as Invited Talk, at the 7th IFAC Symposium on Modelling and Control in Biomedical Systems, (MCBMS'09), Aalborg, Denmark, August 12 - 14, 2009.

  • A. Barat Web Resources for Cancer Epigenetics – Comparison, Advantages and Disadvantages, Institute de Cancerologie Gustave Roussy, Paris, France, April, 2009.

  • A. Barat, H.J. Ruskin, Data Curation for PathEpigen – a Novel Knowledge Management System on the Genetic and Epigenetic Determinants of Cancer Development, 3rd International Biocuration Conference, Berlin, 17th -20th of April, 2009 – presented by A. Barat.

  • A. Barat, H.J. Ruskin PathEpigen – A Novel Knowledge Management Platform for the Molecular Determinants of Colon Cancer, ICTBSB 2009 - International Conference on Trends in Bioanalytical Sciences and Biosensors, Dublin, 26th-28th January, 2009 – presented by A. Barat.

  • J.Daly, M. Crane, H. J. Ruskin,Random matrix theory filters and currency portfolio optimisation,7th International Conference on Applications of Physics in Financial Analysis, (Tokyo, March 2009)

  • 2008
     

  • Burns J., Perrin D. and Ruskin H.J., Network stability and susceptibility in computational epigenetics, presented at the second annual Symposium on Biological Complexity: Genes, Circuits and Behavior, (Salk Institute for Biological Studies, La Jolla, California, USA, January 2008).

  • Kumar, B., Delaure, Y.,Crane, M.,"VOF (PLIC) Method for Tracking Sharp Fluid Interfaces",Irish Society for Scientific \& Engineering Computations and Irish Mechanics Society: Joint Symposium on Advances in Mechanics, (University College Dublin, Ireland,15-16 May, 2008)

  • Perrin D. and Ruskin H.J., The case for epigenetic modelling, The XX International Congress of Genetics, Berlin, Germany, 12th - 17th July 2008.

  • Porwal J., Ruskin H.J., Perrin D. and Roche D., Microscopic model of epigenetic mechanisms, the XX International Congress of Genetics (Berlin, Germany, July 2008).

  • Perrin D., Ruskin H.J. and Crane M., Inclusion of localised patterns in a large-scale agent-based model of the immune response to HIV infection, The 16th Annual International Conference Intelligent Systems for Molecular Biology, ISMB2008, Toronto, Canada, 19th - 23rd July 2008.

  • Perrin D., Ruskin H.J. and Crane M., Towards epigenetic modelling: an initial map, IET BioSysBio Event 2008, Synthetic Biology, Systems Biology and Bioinformatics, London, UK, April 20-22, 2008.

  • 2007
     

  • Tuohey, W.G., Closed-form approximation as a basis for a lightweight radiative transfer model, First Irish Earth Observation Researchers Symposium, Teagasc, Kinsealey, Co. Dublin, Ireland, November 2007.

  • Barat A., Ruskin H.J. and Crane M., 3D Multi-Agent Models for Protein Release from PLGA Spherical Particles with Complex Inner Morphologies, European Conference on Complex Systems (ECCS), Dresden, Germany, 1-5 October 2007.

  • Barat A., Ruskin H.J. and Crane M., Multi-Agent Models for Simulating Protein Release from PLGA Bioerodible Nano- and Microspheres, the 12th International Meeting on Recent Developments in Pharmaceutical Analysis (RDPA), Island of Elba, Italy, 23-26 September 2007.

  • Perrin D., Duhamel C., Ruskin H.J. and Crane M., Microarray biclustering: mathematical model and metaheuristic alternatives, International Conference on Computational Methods (ICCM2007), Hiroshima, Japan, April 4-6 2007.

  • Perrin D., Biocomputation Research: a two-way street between Biology and Computer Science, at the Research Institute for Microbial Diseases, Osaka University, Japan, April 10, 2007.

  • Perrin D., Ruskin H.J., Crane M., The case for epigenetic modelling, poster presented at the second IARC meeting on cancer and epigenetics, International Agency for Research on Cancer, Lyon, France, December 6-7, 2007.

  • Tuohey W.G., Closed-form approximation as a basis for a lightweight radiative transfer model, First Irish Earth Observation Researchers Symposium, November 14 2007, Teagasc (Kinsealey).

  • Yu D., Ghita O., Sutherland A. and Whelan P.F. A New Manifold Representation for Visual Speech Recognition, IMVIP 2007 - The International Machine Vision and Image Processing Conference 2007, 5-7 September, National University of Ireland, Maynooth, Co. Kildare, Ireland.

  • Yu D., Ghita O., Sutherland A. and Whelan P.F. A PCA- based Manifold Representation for Visual Speech Recognition, China-Ireland International Conference on Information and Communications Technologies (CIICT2007), page(247-254), August 28th - 29th, 2007 [Microsoft Best Paper Award].

  • Yu D., Ghita O., Sutherland A. and Whelan P.F. A New Manifold Representation for Visual Speech Recognition, 12th International Conference on Computer Analysis of Images and Patterns (CAIP07), Vienna, Austria, 2007.

  • 2006
     

  • Awad G., Han J. and Sutherland A., A Unified System for Segmentation and Tracking of Face and Hands in Sign Language Recognition, ICPR 2006 - 18th International Conference on Pattern Recognition, Hong Kong, 20-24 August 2006.

  • Coogan T., Awad G. and Han J., Real-Time Gesture Segmentation, Tracking and Recognition, Demonstration at European Conference on Computer Vision, ECCV, Graz, Vienna, 2006.

  • Coogan T., Awad G., Han J. and Sutherland A., Real Time Hand Gesture Recognition Including Hand Segmentation and Tracking, ISVC 2006 - 2nd International Symposium on Visual Computing, Lake Tahoe, Nevada, USA, 6-8 November 2006.

  • Coogan T. and Sutherland A., Transformation Invariance in Hand Shape Recognition, ICPR 2006 - International Conference on Pattern Recognition 2006, Hong Kong, China, 20-24 August 2006.

  • Conlon T., Ruskin H.J., Crane M., Random matrix theory and hedge fund strategy identification, 4th INFINITI Conference on International Finance, Dublin, June 2006.

  • Daly, J., Ruskin, H. J. and Crane, M., Exponentially Weighted Volatility, Random-Matrix-Theory Filters and Stability in Portfolio Optimisation, Econophysics Colloquium 2006 and Third Bonzenfreies Colloquium, Tokyo, November 2006.

  • Deo P. and Ruskin H.J., Comparison of Homogeneous and Heterogeneous Motorised Traffic at Signalised and Two-way Stop control Single lane Intersection, 2006 International Conference on Computational Science and its Applications (ICCSA 2006), Glasgow, UK, May 8-11 2006.

  • Deo P. and Ruskin H.J., Heterogeneous traffic flow at a single lane T-intersection: traffic responsive signalisation, Econophysics Colloquium, Tokyo, Japan, 23rd - 25th Novermber 2006.

  • Han J., Awad G., Sutherland A. and Wu H., Automatic Skin Segmentation for Gesture Recognition Combining Region and Support Vector Machine Active Learning, FGR 2006 - The 7th International Conference on Automatic Face and Gesture Recognition, Southampton, U.K., 10-12 April 2006.

  • Matos J.A.O., Gama S.M.A., Ruskin H., Sharkasi A. and Crane M. (2006). Correlation of worldwide markets’ entropies, Perspectivas of Econophysics Workshop, 27 January 2006, Evora University, Portugal.

  • Murphy J.T. and Walshe R., Micro-Gen: An Agent-Based Model of Bacteria-Antibiotic Interactions in Batch Culture, European Simulation and Modelling Conference, Eurosis-ETI, Toulouse, France, 2006.

  • Perrin D., Ruskin H.J., Burns J. and Crane M., An agent-based approach to immune modelling, 2006 International Conference on Computational Science and its Applications (ICCSA 2006), Glasgow, UK, May 8-11 2006.

  • Perrin D. and Ruskin H.J., Agent-Based Modelling of Viral Infection: An Introduction, poster presented at the BioNet 2006 conference, Tallaght, Ireland, January 18-19 2006.

  • Perrin D., Ruskin H.J. and Crane M. (2006). HIV Modelling - Parallel Implementation Strategies, 3rd International Conference on Cluster and Grid Computing Systems (CGCS'06), Venice, Italy, November 2006.

  • Perrin D., Ruskin H.J. and Crane M., 2006. An agent-based approach to immune modelling, Priming individual response, 3rd International Conference on Modeling and Simulation (ICMS'06), Cairo, Egypt, December 2006.

  • Ruskin, H.J., The Work of the Biocomputation Research Lab., at Waterford Inst. Technology, Ireland, January 25th.

  • Ruskin, H.J., Biocomputation: Cell to System, at National University of Ireland Maynooth, Feb. 24th.

  • Sharkasi A., Crane M., Ruskin H., Matos J.A.O. and Gama S.M.A. (2006). Measuring the Degree of Maturity in Developed Markets, The Condensed Matter and Materials Physics Conference, (CMMP 2006), University of Exeter, UK, 20th - 21st Arpil 2006.

  • Sharkasi, A., Ruskin, H. and Crane, M. (2006). Stock Market Behaviour for Different Time Intervals with Different Volatility Levels, The Third Annual Meeting of the COST P10 Action 'Physics of Risk', 13th - 16th May 2006, Vilnius, Lithuania.

  • Sharkasi, A., Ruskin, H. and Crane, M. (2006). Long-Term Memory in the Irish Market (ISEQ): Evidence from Wavelet Analysis, The International Conference ‘Applications of Physics in Financial Analysis’, 29th June - 1st July 2006, Torino, Italy.

  • Yu D., Ghita O., Sutherland A. and Whelan P.F., Dictionary Based Lip Reading Classification, China-Ireland International Conference on Information and Communications Technologies (CIICT 06), Hangzhou, China, 2006.

  • Yu D., Ghita O., Sutherland A. and Whelan P.F., Dictionary Based Lip Reading Classification, Irish Machine Vision & Image Processing Conference (IMVIP06), Dublin City University, Ireland, 2006.

  • 2005
     

  • Barat, A., Ruskin, H.J, Crane, M., Modelling the in vitro Dissolution of Soluble Binary Drug Delivery Systems using Direct Monte Carlo techniques, First Open International Conference on Modelling and Simulation, Clermont-Ferrand, France, 12th - 15th June 2005.

  • McMahon, N., Crane, M., Ruskin, H.J, Crane, L., Particle Tracking: from Raindrops in 1940 to Drug Dissolution in 2005 Third MIT Conference on Computational Fluid and Solid Mechanics, Cambridge, Mass., 14th - 17th June 2005.

  • Quinn N., (w. L. Killen , F. Buckley), March 2005, at Young Statisticians Meeting 2005, Trinity College, Dublin. Modelling the Fat and Protein Percentage Curves for Irish Dairy Cows

  • Quinn N., (w. L. Killen , F. Buckley), March 2005, at Agricultural Research Forum 2005, Tullamore, Co. Offaly. Modelling Liveweight for Irish Dairy Cows

  • Quinn N., (w. L. Killen , F. Buckley), May 2005, at Conference of Applied Statistics in Ireland 2005, Manor House Hotel, Enniskillen, Co. Fermanagh. Statistical Modelling of Liveweight for Irish Dairy Cows

  • Quinn N., (w. L. Killen , F. Buckley), May 2005, at Annual Meeting of the European Association of Animal Production, Uppsala Sweden. Modelling Liveweight change over a Lactation in Irish Dairy Cows.

  • Quinn N., Killen L., Buckley F., 2005. Statistical Modelling of Fat and Protein Content Curves for Irish Dairy Cows , 25^th European Meeting of Statisticians 24^th – 28^th July 2005, Oslo, Norway.

  • Ruskin, H.J., February 16th 2005. BioComputation: Imitation and Inspiration, Speaker at Bioinformatics Inform 2005, DCU.

  • Ruskin, H.J., February 17th 2005. Speaker at Virtual Inst. Bioinformatics_Eire Bi-Annual Meeting, Biocomputation Group, DCU.

  • Ruskin, H.J., June 7th 2005. Chip, Bytes and Bio: Computational and Mathematical Modelling of Complex Biosystems, Weill Medical College, Cornell University, NY, USA

  • Ruskin, H.J., Crane, M., Walshe, R., June 7th 2005. Biocomputation at DCU, Albert Einstein Medical College, NY, USA.

  • Sharkasi A., (H. J. Ruskin. and M. Crane), March 2005, at Young Statisticians Meeting 2005, Trinity College, Dublin. Long-Term Memory in the Irish Market (ISEQ): Additional Insight from Wavelet Transform".

  • Sharkasi A., (H. J. Ruskin. and M. Crane), 17 June 2005, at Applied Mathematics, Porto University, Port, Portugal. Long Memory in Irish Market

  • Sharkasi A., (H. J. Ruskin. and M. Crane), 23 June 2005, at Applied Mathematics, Porto University, Port, Portugal. Interrelationship among international stock market Indices

  •  
     

    2004
     

  • Quinn N., Killen L., Buckley F., 2004. Statistical Modelling of Lactation Curve Data, CompStat 2004, Prague, Czech Republic

  • Quinn N., Killen L., Buckley F., 2004. Modelling Lactation Curves for Irish Dairy Cows, 34^th ICAR Session, Sousse, Tunisia. 1^st - 3^rd June 2004.

  • Quinn N., Killen L., Buckley F., 2004. A Statistical Analysis of Lactation Curve Data, Agricultural Research Forum 2004, Tullamore, Co.Offaly.

  • December 2004, Kerr, G., (w. R. Walshe, M. Duggan, C. Pender, R. Winters), at Annual BioNet Conference, Institute of Technology Carlow, The BAIT Simulation: Bacteria Antibiotic Interaction Tool

  • November 2004, Barat, A., (w. M. Crane, & H.J. Ruskin), at Irish Association for High Performance Computing Symposium, Monte Carlo and Cellular Automata Techniques in Simulating Drug Dissolution

  • November 2004, Sharkasi, A., (w. M. Crane, & H.J. Ruskin), at Third Nikkei Econophysics Symposium - Practical Fruits of Econophysics, Nihon Keisai Shimbun,Tokyo, Japan, Apples and Oranges: the Difference Between the Reaction of Emerging and Mature Markets to Crashes

  • October 2004, J. Burns, (w. H. Ruskin) at Sixth International conference on Cellular Automata for Research and Industry (ACRI 04), Amsterdam, The Netherlands,  A Stochastic Model of the Effector T Cell Lifecycle". 

  • July 2004, A. Barat (w. M. Crane, H.J. Ruskin & A.-M. Healy) at EXYSTENCE Thematic Institute: From Many-Particle Physics to Multi-Agent Systems, Max Planck Institute for the Physics of Complex Systems (MPIPKS), Dresden, Germany, Monte-Carlo models of dissolution of multi-component tablets in the USP paddle apparatus

  • May 2004, Y. Feng, (w. H.J. Ruskin, Y. Liu) at International Conference on Computational Science & Applications (ICCSA04), Assisi, Italy, Multiple Parameterisation of Human Immune Response in HIV: Many-Cell Models.

  • May 2004, K. Podesta (w. M. Crane, H.J. Ruskin) at International Conference on Computational Science & Applications (ICCSA04), Assisi, Italy, Running EMBOSS on a cluster of workstations

  • March 2004, Horgan, J.,  Invited talk to Facultad de Contaduria y Administacion, A New method for Stratifying Skewed Data: Applications in Auditing

  •  
     
     

    2003
     

  • Nov 2003 - K. Podesta (w. M. Crane, H.J. Ruskin) at IAHPC meeting, Irish Association for High Performance Computing, Dublin City University. The Biologist does not compute

  • June 2003 - J. Burns (w. H. Ruskin) at IASTED International Conference on Biomedical Engineering, Saltzburg, Austria. Viral Strain Diversity and Immune Response - a Computational Model

  • June 2003 - J. Burns (w. H. Ruskin) at International Conference on Computational Science, St. Petersburg, Russia. A Model of Immune Suppression and Repertoire Evolution

  • May 2003 - J.M. Horgan (w. C. Daly) at Conference of Applied Statistics in Ireland, Mullingar, Ireland. Automated Learning Systems: What the Statistics Say

  • May 2003 - S. Sharifi (w. A. Shamaie, M. Crane) at Conference of Applied Statistics in Ireland, Mullingar, Ireland. Noise in the Correlation Matrix

  • May 2003 - Y. Bimpeh (w. J.M. Horgan) at Conference of Applied Statistics in Ireland, Mullingar, Ireland. Inference on Rare Errors Using Asymptotic Expansion for Studenttized Compound Poisson Process

  • May 2003 - W. G. Tuohey at Conference of Applied Statistics in Ireland, Mullingar, Ireland. Approach to the Inversion Problem in Radiative Transfer

  • May 2003 - N. Quinn (w. L. Killen, F. Buckley) at Conference of Applied Statistics in Ireland, Mullingar, Ireland. Modelling Lactation Curves for Irish Dairy Cows

  • May 2003 - P. Gunning (w J.M. Horgan, W. Yancey) at Conference of Applied Statistics in Ireland, Mullingar, Ireland. A new method of stratification by size for skewed populations

  • May 2003 - undecided (H. Ruskin, R. Wang) at Int. Conf. on Computational Science and its Applications, Montreal, Canada. Modelling Traffic Flow at a Multilane Intersection

  • April 2003 - A. Shamaie (w A. Sutherland) at 5th International Workshop on Gesture and Sign Language based Human-Computer Interaction, Genova, Italy - A Dynamic Model for Real-time Tracking of Hands in Bimanual Movements

  • March 2003 - N. McMahon (w. H. Ruskin, M. Crane, L. Crane.) at GAMM, Padua, Italy - Drug Dissolution Models

  • Feb 2003 - N. Quinn (w. L. Killen, F. Buckley) at the Agricultural Research Forum 2003, Tullamore, Co. Offaly, Ireland - The Factors affecting lactation curves of Irish Dairy Cows

  • Feb 2003 - A. Shamaie (w A. Sutherland) at 2nd Iranian Conference on Machine Vision and Image Processing, K.N. Toosi University of Technology, Tehran, Iran - Accurate Recognition of Large Number of Hand Gestures

  •  
     
     

    2002
     

  • Nov 2002 - K. Podesta (w. M. Crane, H.J. Ruskin) at IAHPC meeting, Irish Association for High Performance Computing, University College Dublin

  • Nov 2002 - H. Ruskin (w. M. Crane, G. Keogh, S. Sharifi) at the 2nd Nikkei Workshop and Symposium, Tokyo, Japan - Leverage and Cross-Asset Volatility Correlation-Empirical or Optimistic?

  • Sep 2002 - J. Burns (w. Heather Ruskin) at the 7th Granada Seminar on Complex Systems, Spain - MC model of Immune Suppression and T-cell receptor cross-reactivity during primary response

  • May/June 2002 - H. Ruskin (translation Y. Feng) at Dalian University of Technology, Dept. of Computer Science. 3 invited lectures on Modelling & Scientific Computing in CA" and related topics

  • May/June 2002 - H. Ruskin at Beijing Software Centre, China - ICT Sector in Ireland.

  • April 2002 - Y. Feng (w. B. Zhu, H. Ruskin) at the International Conference on Computational Science, Amsterdam, the Netherlands - Virtual Phase Dynamics for Constrained Geometries in Soap Froth

  • April 2002 - R. Wang (w. H. Ruskin) at the International Conference on Computational Science, Amsterdam, the Netherlands - Modelling Traffic Flow at Urban Unsignalized Intersection.

  • April 2002 - Y. Liu (w. H. Ruskin) at the International Conference on Computational Science, Amsterdam, The Netherlands - A Mesoscopic Approach to modelling Immunological Memory

  • Feb 2002 - R. Wang (w. H. Ruskin) at the IASTED Intl. Conf. on Modelling, Identification and Control, Innsbruck, Austria - Effects of Driver Behaviour on Cross-Traffic

  •  
     
     

    2001
     

  • Dec 2001 - Y. Feng (w. H. Ruskin) at Horizons in Complex Systems, Messina, Sicily - 2D Froth Dynamics for Constrained Geometries

  • Oct 2001 - A. Shamaie (w. A. Sutherland) at IEEE Applied Imagery Pattern Recognition Workshop (AIPR 2001), Washington DC, USA - Graph-based Matching of Occluded Hand Gestures

  • Sep 2001 - A. Shamaie (w. A. Sutherland) at Machine Vision and Image Processing Conference (IMVIP 2001), National University of Ireland, Maynooth, Ireland - Classification of Coarticulated and Partly Occluded Hand Gestures

  • Sep 2001 - R. Wang (w. H. Ruskin) at the Europhysics Conference on Computational Physics, Aachen, Germany - Modelling traffic flow for a single-lane urban roundabout

  • May 2001 - J.M. Horgan at American Accounting Association Western Region Meeting - A Fixed-Sample-Size Without-Replacement Plan for Substantive Tests


 

The MODSCI recommended format for listing publications and presentations is Elsevier Harvard Format. Examples follow:

Conference/proceedings papers

Ribba, B., Alarcon, T., Marron, K., Maini, P., Agur, Z., 2004. The Use of Hybrid Cellular Automaton Models for Improving Cancer Therapy. In: P.M.A. Sloot and Bastien Chopard and Alfons G. Hoekstra (Ed.), Cellular Automata. Vol. 3305 of Lecture Notes in Computer Science. Springer- Verlag, Berlin Heidelberg, pp. 444-453.

Journal papers

Selin, L. K., Varga, S. M., Wong, I. C., Welsh, R. M., 1998. Protective Het- erologous Antiviral Immunity and Enhanced Immunopathogenesis Mediated by Memory T Cell Populations. J. Exp. Med. 188, 1705-1715.

Books

Nowak, M. A., May, R. M., 2000. Virus Dynamics. Oxford Univ. Press, Oxford New York, Ch. 14, pp. 149-181.

Additional Notes

  1. Journal abbreviations need to follow the approved international naming standards.

  2. For LaTeX users, the required file (elsart-harv.bst) is available from Elseview website, just follow the links for information for authors. You will need the line: \bibliographystyle{elsart-harv} in your latex files to obtain this format automatically (of course, you'll still need a bibTeX file).

  3. The conference format is a little fussy, but if you have the info in your bibTeX file, its a simple matter to extract it.

  4. Italics and bold have been omitted in the examples above, in keeping with the Elsevier Harvard style.

Compiled by John Burns, 2005.


 

Contact: +353 1 700 6747 / msc @ computing.dcu.ie